Package: pvm 1.0

Louis Dijkstra

pvm: PharmacoVigilance Methods

A collection of methods used in the field of pharmacovigilance for the dectection of 'interesting' drug-adverse event pairs from spontaneous reporting data.

Authors:Louis Dijkstra [aut, cre], Marco Garling [ctb]

pvm_1.0.tar.gz
pvm_1.0.zip(r-4.5)pvm_1.0.zip(r-4.4)pvm_1.0.zip(r-4.3)
pvm_1.0.tgz(r-4.4-x86_64)pvm_1.0.tgz(r-4.4-arm64)pvm_1.0.tgz(r-4.3-x86_64)pvm_1.0.tgz(r-4.3-arm64)
pvm_1.0.tar.gz(r-4.5-noble)pvm_1.0.tar.gz(r-4.4-noble)
pvm_1.0.tgz(r-4.4-emscripten)pvm_1.0.tgz(r-4.3-emscripten)
pvm.pdf |pvm.html✨
pvm/json (API)

# Install 'pvm' in R:

install.packages('pvm', repos = c('https://bips-hb.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bips-hb/pvm/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

srdata - A Simulated Spontaneous Reporting System

On CRAN:

pharmacovigilance

3.27 score 25 stars 15 scripts 17 exports 17 dependencies

Last updated 17 days agofrom:44429e0422. Checks:OK: 9. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 06 2024
R-4.5-win-x86_64	OK	Nov 06 2024
R-4.5-linux-x86_64	OK	Nov 06 2024
R-4.4-win-x86_64	OK	Nov 06 2024
R-4.4-mac-x86_64	OK	Nov 06 2024
R-4.4-mac-aarch64	OK	Nov 06 2024
R-4.3-win-x86_64	OK	Nov 06 2024
R-4.3-mac-x86_64	OK	Nov 06 2024
R-4.3-mac-aarch64	OK	Nov 06 2024

Exports:BCPNN chi2Test convertRawReports2Tables createTable dbinbinom fisherExactTest fitPriorParametersGPS GPS LASSO loglikelihood2NegativeBinomial logLikelihoodRatioBinomial near PoissonTest PRR ROR RRR YulesQ

Dependencies:coda codetools foreach glmnet iterators lattice MASS Matrix MatrixModels mcmc MCMCpack quantreg Rcpp RcppEigen shape SparseM survival

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Bayesian Confidence Propagation Neural Network (BCPNN)	BCPNN
Chi-squared Test	chi2Test
Convert Reports to 2 x 2 Tables	convertRawReports2Tables
Create 2 x 2 Tables	convertRawReports2TablesRcpp
Create 2 x 2 Table	createTable
Bimodal Negative Binomial	dbinbinom
Fisher's Exact Test	fisherExactTest
Prior Parameter Fit for the GPS	fitPriorParametersGPS
Gamma Poisson Shrinker (GPS)	GPS
LASSO	LASSO
Log-Likelihood of the Bimodal Negative Binomial	loglikelihood2NegativeBinomial
Binomial Log-Likelihood Ratio Test	logLikelihoodRatioBinomial
near	near
Test of the Poisson Mean	PoissonTest
Proportional Reporting Rate (PRR)	PRR
Reporting Odds Ratio (ROR)	ROR
Relative Reporting Risk (RRR)	RRR
A Simulated Spontaneous Reporting System	srdata
Yule's Q	YulesQ