{ "_id": "6a49898c6d67900babdf9c82", "Package": "pvm", "Title": "PharmacoVigilance Methods", "Version": "1.0", "Author": "Louis Dijkstra [aut, cre], Marco Garling [ctb]", "Maintainer": "Louis Dijkstra ", "Description": "A collection of methods used in the field of\npharmacovigilance for the dectection of 'interesting'\ndrug-adverse event pairs from spontaneous reporting data.", "License": "GPL (>= 3)", "URL": "https://github.com/bips-hb/pvm", "BugReports": "https://github.com/bips-hb/pvm/issues", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Repository": "https://bips-hb.r-universe.dev", "Date/Publication": "2025-02-10 16:13:06 UTC", "RemoteUrl": "https://github.com/bips-hb/pvm", "RemoteRef": "HEAD", "RemoteSha": "4a88f65f836692f0580d1969989b266a9585cb83", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-22 08:03:40 UTC", "User": "root" }, "_user": "bips-hb", "_type": "src", "_file": "pvm_1.0.tar.gz", "_fileid": "https://r2.ropensci.org/9014f63efca2aace1f93338e7e941b0c876be832d89555e78869d09ed2924fe7", "_filesize": 215324, "_sha256": "9014f63efca2aace1f93338e7e941b0c876be832d89555e78869d09ed2924fe7", "_expires": "2026-10-12T22:30:34.000Z", "_created": "2026-06-22T08:03:40.000Z", "_published": "2026-07-04T22:30:36.132Z", "_jobs": [ { "job": 85172312191, "time": 174, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7786498662" }, { "job": 85172312074, "time": 131, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7786482943" }, { "job": 85172312264, "time": 180, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7786500354" }, { "job": 85172312064, "time": 127, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7786481525" }, { "job": 85172312216, "time": 97, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7786470998" }, { "job": 85172312232, "time": 324, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7786549302" }, { "job": 85172312109, "time": 166, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7786495005" }, { "job": 85172312160, "time": 200, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7786506525" }, { "job": 85172311796, "time": 160, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7786434769" }, { "job": 85172311998, "time": 105, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7786473757" }, { "job": 85172312147, "time": 113, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7786476394" }, { "job": 85172312061, "time": 106, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7786474353" }, { "job": 85172312067, "time": 118, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7786478379" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528", "_status": "success", "_upstream": "https://github.com/bips-hb/pvm", "_commit": { "id": "4a88f65f836692f0580d1969989b266a9585cb83", "author": "Ronja Foraita <15413913+rforaita@users.noreply.github.com>", "committer": "GitHub ", "message": "Update README.md", "time": 1739203986 }, "_maintainer": { "name": "Louis Dijkstra", "email": "dijkstra@leibniz-bips.de", "login": "louisdijkstra", "description": "", "uuid": 752831 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.2.3", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "glmnet", "role": "Imports" }, { "package": "MCMCpack", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "stats", "role": "Imports" } ], "_owner": "bips-hb", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "pharmacovigilance", "cpp" ], "_stars": 33, "_contributors": [ { "user": "louisdijkstra", "count": 25, "uuid": 752831 }, { "user": "jemus42", "count": 4, "uuid": 1613346 }, { "user": "rforaita", "count": 1, "uuid": 15413913 } ], "_userbio": { "uuid": 34575917, "type": "organization", "name": "BIPS", "followers": 41, "description": "Leibniz Institute for Prevention Research and Epidemiology" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/pvm" }, "_devurl": "https://github.com/bips-hb/pvm", "_searchresults": 16, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/pvm.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "BCPNN", "chi2Test", "convertRawReports2Tables", "createTable", "dbinbinom", "fisherExactTest", "fitPriorParametersGPS", "GPS", "LASSO", "loglikelihood2NegativeBinomial", "logLikelihoodRatioBinomial", "near", "PoissonTest", "PRR", "ROR", "RRR", "YulesQ" ], "_datasets": [ { "name": "srdata", "title": "A Simulated Spontaneous Reporting System", "object": "srdata", "class": [ "list" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "BCPNN", "title": "Bayesian Confidence Propagation Neural Network (BCPNN)", "topics": [ "BCPNN" ] }, { "page": "chi2Test", "title": "Chi-squared Test", "topics": [ "chi2Test" ] }, { "page": "convertRawReports2Tables", "title": "Convert Reports to 2 x 2 Tables", "topics": [ "convertRawReports2Tables" ] }, { "page": "convertRawReports2TablesRcpp", "title": "Create 2 x 2 Tables", "topics": [ "convertRawReports2TablesRcpp" ] }, { "page": "createTable", "title": "Create 2 x 2 Table", "topics": [ "createTable" ] }, { "page": "dbinbinom", "title": "Bimodal Negative Binomial", "topics": [ "dbinbinom" ] }, { "page": "fisherExactTest", "title": "Fisher's Exact Test", "topics": [ "fisherExactTest" ] }, { "page": "fitPriorParametersGPS", "title": "Prior Parameter Fit for the GPS", "topics": [ "fitPriorParametersGPS" ] }, { "page": "GPS", "title": "Gamma Poisson Shrinker (GPS)", "topics": [ "GPS" ] }, { "page": "LASSO", "title": "LASSO", "topics": [ "LASSO" ] }, { "page": "loglikelihood2NegativeBinomial", "title": "Log-Likelihood of the Bimodal Negative Binomial", "topics": [ "loglikelihood2NegativeBinomial" ] }, { "page": "logLikelihoodRatioBinomial", "title": "Binomial Log-Likelihood Ratio Test", "topics": [ "logLikelihoodRatioBinomial" ] }, { "page": "near", "title": "near", "topics": [ "near" ] }, { "page": "PoissonTest", "title": "Test of the Poisson Mean", "topics": [ "PoissonTest" ] }, { "page": "PRR", "title": "Proportional Reporting Rate (PRR)", "topics": [ "PRR" ] }, { "page": "ROR", "title": "Reporting Odds Ratio (ROR)", "topics": [ "ROR" ] }, { "page": "RRR", "title": "Relative Reporting Risk (RRR)", "topics": [ "RRR" ] }, { "page": "srdata", "title": "A Simulated Spontaneous Reporting System", "topics": [ "srdata" ] }, { "page": "YulesQ", "title": "Yule's Q", "topics": [ "YulesQ" ] } ], "_readme": "https://github.com/bips-hb/pvm/raw/HEAD/README.md", "_rundeps": [ "coda", "codetools", "foreach", "glmnet", "iterators", "lattice", "MASS", "Matrix", "MatrixModels", "mcmc", "MCMCpack", "quantreg", "Rcpp", "RcppEigen", "shape", "SparseM", "survival" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 3.722633922533812, "_indexed": true, "_nocasepkg": "pvm", "_universes": [ "bips-hb", "louisdijkstra" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0", "date": "2026-06-22T08:06:31.000Z", "distro": "noble", "arch": "aarch64", "commit": "4a88f65f836692f0580d1969989b266a9585cb83", "fileid": "https://r2.ropensci.org/a6939284f9a3972b2efc1ee99dfd4d08feeec1d2f756e7a94a89474ad1577aa2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528" }, { "r": "4.7.0", "os": "linux", "version": "1.0", "date": "2026-06-22T08:05:38.000Z", "distro": "noble", "arch": "x86_64", "commit": "4a88f65f836692f0580d1969989b266a9585cb83", "fileid": "https://r2.ropensci.org/3b4b3e3a60b90280ea5ab5612f62d3357389c77abfe061a79c2e5d16dfb0e6b8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528" }, { "r": "4.6.0", "os": "linux", "version": "1.0", "date": "2026-06-22T08:06:33.000Z", "distro": "noble", "arch": "aarch64", "commit": "4a88f65f836692f0580d1969989b266a9585cb83", "fileid": "https://r2.ropensci.org/9d81b483e878c35028283055d809df58473ae554edddd8bb044c6cff47fb6205", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528" }, { "r": "4.6.0", "os": "linux", "version": "1.0", "date": "2026-06-22T08:05:35.000Z", "distro": "noble", "arch": "x86_64", "commit": "4a88f65f836692f0580d1969989b266a9585cb83", "fileid": "https://r2.ropensci.org/cf67472e26d5f46323918de377cafa1dab4fad440f0f2d22ebef17cfbd05b57f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528" }, { "r": "4.5.3", "os": "mac", "version": "1.0", "date": "2026-06-22T08:05:16.000Z", "arch": "aarch64", "commit": "4a88f65f836692f0580d1969989b266a9585cb83", "fileid": "https://r2.ropensci.org/0bfc4f38f5cfe8b8e52cde8423f9893a8f3b0dc81d1053738cf598b59e11cf70", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528" }, { "r": "4.5.3", "os": "mac", "version": "1.0", "date": "2026-06-22T08:08:07.000Z", "arch": "x86_64", "commit": "4a88f65f836692f0580d1969989b266a9585cb83", "fileid": "https://r2.ropensci.org/3166c7743bb9164240e34ac522c753605f5d23d5adcdcc0f229c26a7c87791cc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528" }, { "r": "4.6.0", "os": "mac", "version": "1.0", "date": "2026-06-22T08:06:12.000Z", "arch": "aarch64", "commit": "4a88f65f836692f0580d1969989b266a9585cb83", "fileid": "https://r2.ropensci.org/49737f7931766307dbe2485121cd044ecc579ac564bab291a4910b31fe12857b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528" }, { "r": "4.6.0", "os": "mac", "version": "1.0", "date": "2026-06-22T08:06:30.000Z", "arch": "x86_64", "commit": "4a88f65f836692f0580d1969989b266a9585cb83", "fileid": "https://r2.ropensci.org/0f8c59ede252340b7956ff4bad79029aa608a89851290e26ce3f4bd702cf192b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528" }, { "r": "4.6.0", "os": "wasm", "version": "1.0", "date": "2026-06-22T08:05:42.000Z", "arch": "emscripten", "commit": "4a88f65f836692f0580d1969989b266a9585cb83", "fileid": "https://r2.ropensci.org/d0d7e3a9f3dd2786fd15e79015d78fd4b7723f9fcd4f30206fbdd2f6e78cc3e7", "status": "success", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528" }, { "r": "4.7.0", "os": "win", "version": "1.0", "date": "2026-06-22T08:04:58.000Z", "arch": "x86_64", "commit": "4a88f65f836692f0580d1969989b266a9585cb83", "fileid": "https://r2.ropensci.org/0c3e009251ea657deabc242961bd040bd17656cef16743327eeef086c721050d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528" }, { "r": "4.5.3", "os": "win", "version": "1.0", "date": "2026-06-22T08:04:54.000Z", "arch": "x86_64", "commit": "4a88f65f836692f0580d1969989b266a9585cb83", "fileid": "https://r2.ropensci.org/f99c47093b33535c1bdbd2c413182d96c5401f8236aeadcb4fe678dc9bfdacad", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528" }, { "r": "4.6.0", "os": "win", "version": "1.0", "date": "2026-06-22T08:04:51.000Z", "arch": "x86_64", "commit": "4a88f65f836692f0580d1969989b266a9585cb83", "fileid": "https://r2.ropensci.org/de7af4f7a2d5988e9f91bb826ecb34d59666e04ba545543b819a8fd4b5f45b79", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27938213528" } ] }