Package: CVN 1.1

Ronja Foraita

CVN: Covariate-Varying Networks

Inferring high-dimensional Gaussian graphical networks that change with multiple discrete covariates. Louis Dijkstra, Arne Godt, Ronja Foraita (2024) <doi:10.48550/arXiv.2407.19978>.

Authors:Louis Dijkstra [aut], Ronja Foraita [aut, cre], Lukas Burk [ctb], Leibniz Inst Prev Res & Epidemiology - BIPS [cph, fnd], Deutsche Forschungsgemeinschaft [fnd]

CVN_1.1.tar.gz
CVN_1.1.zip(r-4.7)CVN_1.1.zip(r-4.6)CVN_1.1.zip(r-4.5)
CVN_1.1.tgz(r-4.6-x86_64)CVN_1.1.tgz(r-4.6-arm64)CVN_1.1.tgz(r-4.5-x86_64)CVN_1.1.tgz(r-4.5-arm64)
CVN_1.1.tar.gz(r-4.7-arm64)CVN_1.1.tar.gz(r-4.7-x86_64)CVN_1.1.tar.gz(r-4.6-arm64)CVN_1.1.tar.gz(r-4.6-x86_64)
CVN_1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CVN/json (API)

# Install 'CVN' in R:

install.packages('CVN', repos = c('https://bips-hb.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bips-hb/cvn/issues

Pkgdown/docs site:https://bips-hb.github.io

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

grid - Data for a grid of graphs

On CRAN:

graphical-models high-dimensional-statistics network-analysis cpp

2.60 score 8 scripts 27 exports 65 dependencies

Last updated from:7d878b78d4. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	152
linux-devel-x86_64	OK	214
source / vignettes	OK	177
linux-release-arm64	OK	151
linux-release-x86_64	OK	157
macos-release-arm64	OK	99
macos-release-x86_64	OK	214
macos-oldrel-arm64	OK	111
macos-oldrel-x86_64	OK	182
windows-devel	OK	137
windows-release	OK	145
windows-oldrel	OK	134
wasm-release	OK	124

Exports:%>%combine_cvn combine_cvn_interpolated create_edges_visnetwork create_nodes_visnetwork create_weight_matrix CVN cvn_edge_summary determine_information_criterion_cvn extract_cvn find_core_graph find_unique_edges genlasso_wrapper hamming_distance hamming_distance_adj_matrices hd_weight_matrix interpolate matrix_A_inner_ADMM plot_hamming_distances plot_hamming_distances_cvn plot_information_criterion plot_weight_matrix relative_difference_precision_matrices set_attributes_to_edges_visnetwork strip_cvn visnetwork visnetwork_cvn

Dependencies:base64enc bslib cachem cli codetools cpp11 crayon digest doParallel dplyr evaluate farver fastmap fontawesome foreach fs generics ggplot2 glasso glue gtable highr hms htmltools htmlwidgets igraph isoband iterators jquerylib jsonlite knitr labeling lattice lifecycle magrittr Matrix memoise mime pillar pkgconfig plyr prettyunits progress R6 rappdirs RColorBrewer Rcpp reshape2 rlang rmarkdown S7 sass scales stringi stringr tibble tidyselect tinytex utf8 vctrs viridisLite visNetwork withr xfun yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Covariate-varying Networks	CVN-package
Combine CVNs of size 1	combine_cvn
Combine CVN object with interpolated CVN object	combine_cvn_interpolated
Create a 'data.frame' for the Edges for 'visNetwork'	create_edges_visnetwork
Nodes for the 'visNetwork' package	create_nodes_visnetwork
Different Weight Matrices	create_weight_matrix
Estimating a Covariate-Varying Network (CVN)	CVN
Edge Overview	cvn_edge_summary
Information Criteria for a 'cvn' object	determine_information_criterion_cvn
Extract CVN	extract_cvn
The Core Graph	find_core_graph
Unique Edges	find_unique_edges
Generalized LASSO	genlassoRcpp
Data for a grid of graphs (3 x 3)	grid
Structural Hamming Distance for a 'cvn' Object	hamming_distance
Structural Hamming Distance	hamming_distance_adj_matrices
Heatmap Plot of the Weight Matrix	hd_weight_matrix
Interpolation of a Graph	interpolate
Determine matrix A for inner-ADMM for the Z-update step	matrix_A_inner_ADMM
Heat Map of the Distances between Graphs	plot_hamming_distances
Heatmaps for a CVN	plot_hamming_distances_cvn
Heat Map of an Information Criterion (AIC or BIC)	plot_information_criterion
Plot weight matrix as a grid	plot_weight_matrix
Plot Function for CVN Object Class	plot.cvn
Print CVN	print.cvn
The Relative Difference between two Precision Matrices	relative_difference_precision_matrices
Add Attributes to Subset of Edges for 'visNetwork'	set_attributes_to_edges_visnetwork
Strip CVN	strip_cvn
The Z-update Step	updateZRcpp
A 'visNetwork' plot	visnetwork
All 'visNetwork' plots for a CVN object	visnetwork_cvn