{ "_id": "6a49e478b9e0f8b4cfe33fe4", "Package": "CVN", "Title": "Covariate-Varying Networks", "Version": "1.1", "Authors@R": "c(\nperson(\"Louis\", \"Dijkstra\", role = \"aut\", comment = c(ORCID = \"0000-0003-1476-6202\")),\nperson(given = \"Ronja\", family = \"Foraita\",\nemail = \"foraita@leibniz-bips.de\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-2216-6653\")),\nperson(\"Lukas\", \"Burk\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7528-3795\")),\nperson(\"Leibniz Inst Prev Res & Epidemiology - BIPS\", role = c(\"cph\",\"fnd\"), comment = c(ROR = \"02c22vc57\")),\nperson(\"Deutsche Forschungsgemeinschaft (DFG)\", role = \"fnd\"))", "Description": "Inferring high-dimensional Gaussian graphical networks\nthat change with multiple discrete covariates. Louis Dijkstra,\nArne Godt, Ronja Foraita (2024)\n.", "License": "GPL-3", "URL": "https://github.com/bips-hb/CVN, https://bips-hb.github.io/CVN/", "BugReports": "https://github.com/bips-hb/CVN/issues", "LazyData": "true", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Spelling": "Arne, Foraita, Godt, Ronja", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev", "Repository": "https://bips-hb.r-universe.dev", "Date/Publication": "2025-10-23 07:48:13 UTC", "RemoteUrl": "https://github.com/bips-hb/CVN", "RemoteRef": "HEAD", "RemoteSha": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-14 08:02:25 UTC", "User": "root" }, "Author": "Louis Dijkstra [aut] (ORCID: ),\nRonja Foraita [aut, cre] (ORCID:\n),\nLukas Burk [ctb] (ORCID: ),\nLeibniz Inst Prev Res & Epidemiology - BIPS [cph, fnd] (ROR:\n),\nDeutsche Forschungsgemeinschaft (DFG) [fnd]", "Maintainer": "Ronja Foraita ", "_user": "bips-hb", "_type": "src", "_file": "CVN_1.1.tar.gz", "_fileid": "https://r2.ropensci.org/cc4417d93fa9ada0621f14a3508ec7b40220e7934f3872a5507a0aec67f5f35a", "_filesize": 377377, "_sha256": "cc4417d93fa9ada0621f14a3508ec7b40220e7934f3872a5507a0aec67f5f35a", "_expires": "2026-10-13T04:58:31.000Z", "_created": "2026-06-14T08:02:25.000Z", "_published": "2026-07-05T04:58:32.943Z", "_jobs": [ { "job": 85194114759, "time": 163, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7618959267" }, { "job": 85194114636, "time": 160, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7618958504" }, { "job": 85194114661, "time": 154, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7618957609" }, { "job": 85194114647, "time": 166, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7618960118" }, { "job": 85194114739, "time": 88, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7618948417" }, { "job": 85194114689, "time": 216, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7618966039" }, { "job": 85194114736, "time": 158, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7618958159" }, { "job": 85194114690, "time": 244, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7618969668" }, { "job": 85194114589, "time": 195, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7618936390" }, { "job": 85194114612, "time": 122, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7618952928" }, { "job": 85194114715, "time": 129, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7618953845" }, { "job": 85194114744, "time": 127, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7618953693" }, { "job": 85194114764, "time": 135, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7618954824" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182", "_status": "success", "_upstream": "https://github.com/bips-hb/CVN", "_commit": { "id": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "author": "Ronja Foraita <15413913+rforaita@users.noreply.github.com>", "committer": "Ronja Foraita <15413913+rforaita@users.noreply.github.com>", "message": "igraph included in descrtipion under Imports\n", "time": 1761205693 }, "_maintainer": { "name": "Ronja Foraita", "email": "foraita@leibniz-bips.de", "login": "rforaita", "description": "", "uuid": 15413913, "orcid": "0000-0003-2216-6653" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "crayon", "role": "Imports" }, { "package": "doParallel", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "foreach", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "glasso", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "progress", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "reshape2", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "visNetwork", "role": "Imports" }, { "package": "htmltools", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bips-hb", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-24", "n": 1 }, { "week": "2025-43", "n": 7 } ], "_tags": [], "_topics": [ "graphical-models", "high-dimensional-statistics", "network-analysis", "cpp" ], "_stars": 0, "_contributors": [ { "user": "rforaita", "count": 26, "uuid": 15413913 }, { "user": "louisdijkstra", "count": 25, "uuid": 752831 }, { "user": "jemus42", "count": 3, "uuid": 1613346 } ], "_userbio": { "uuid": 34575917, "type": "organization", "name": "BIPS", "followers": 40, "description": "Leibniz Institute for Prevention Research and Epidemiology" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CVN" }, "_devurl": "https://github.com/bips-hb/cvn", "_pkgdown": "https://bips-hb.github.io/CVN/", "_searchresults": 8, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/CVN.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "%>%", "combine_cvn", "combine_cvn_interpolated", "create_edges_visnetwork", "create_nodes_visnetwork", "create_weight_matrix", "CVN", "cvn_edge_summary", "determine_information_criterion_cvn", "extract_cvn", "find_core_graph", "find_unique_edges", "genlasso_wrapper", "hamming_distance", "hamming_distance_adj_matrices", "hd_weight_matrix", "interpolate", "matrix_A_inner_ADMM", "plot_hamming_distances", "plot_hamming_distances_cvn", "plot_information_criterion", "plot_weight_matrix", "relative_difference_precision_matrices", "set_attributes_to_edges_visnetwork", "strip_cvn", "visnetwork", "visnetwork_cvn" ], "_datasets": [ { "name": "grid", "title": "Data for a grid of graphs (3 x 3)", "object": "grid", "class": [ "list" ], "fields": [], "table": true, "tojson": true } ], "_help": [ { "page": "CVN-package", "title": "Covariate-varying Networks", "topics": [ "CVN-package" ] }, { "page": "combine_cvn", "title": "Combine CVNs of size 1", "topics": [ "combine_cvn" ] }, { "page": "combine_cvn_interpolated", "title": "Combine CVN object with interpolated CVN object", "topics": [ "combine_cvn_interpolated" ] }, { "page": "create_edges_visnetwork", "title": "Create a 'data.frame' for the Edges for 'visNetwork'", "topics": [ "create_edges_visnetwork" ] }, { "page": "create_nodes_visnetwork", "title": "Nodes for the 'visNetwork' package", "topics": [ "create_nodes_visnetwork" ] }, { "page": "create_weight_matrix", "title": "Different Weight Matrices", "topics": [ "create_weight_matrix" ] }, { "page": "CVN", "title": "Estimating a Covariate-Varying Network (CVN)", "topics": [ "CVN" ] }, { "page": "cvn_edge_summary", "title": "Edge Overview", "topics": [ "cvn_edge_summary" ] }, { "page": "determine_information_criterion_cvn", "title": "Information Criteria for a 'cvn' object", "topics": [ "determine_information_criterion_cvn" ] }, { "page": "extract_cvn", "title": "Extract CVN", "topics": [ "extract_cvn" ] }, { "page": "find_core_graph", "title": "The Core Graph", "topics": [ "find_core_graph" ] }, { "page": "find_unique_edges", "title": "Unique Edges", "topics": [ "find_unique_edges" ] }, { "page": "genlassoRcpp", "title": "Generalized LASSO", "topics": [ "genlassoRcpp" ] }, { "page": "grid", "title": "Data for a grid of graphs (3 x 3)", "topics": [ "grid" ] }, { "page": "hamming_distance", "title": "Structural Hamming Distance for a 'cvn' Object", "topics": [ "hamming_distance" ] }, { "page": "hamming_distance_adj_matrices", "title": "Structural Hamming Distance", "topics": [ "hamming_distance_adj_matrices" ] }, { "page": "hd_weight_matrix", "title": "Heatmap Plot of the Weight Matrix", "topics": [ "hd_weight_matrix" ] }, { "page": "interpolate", "title": "Interpolation of a Graph", "topics": [ "interpolate" ] }, { "page": "matrix_A_inner_ADMM", "title": "Determine matrix A for inner-ADMM for the Z-update step", "topics": [ "matrix_A_inner_ADMM" ] }, { "page": "plot_hamming_distances", "title": "Heat Map of the Distances between Graphs", "topics": [ "plot_hamming_distances" ] }, { "page": "plot_hamming_distances_cvn", "title": "Heatmaps for a CVN", "topics": [ "plot_hamming_distances_cvn" ] }, { "page": "plot_information_criterion", "title": "Heat Map of an Information Criterion (AIC or BIC)", "topics": [ "plot_information_criterion" ] }, { "page": "plot_weight_matrix", "title": "Plot weight matrix as a grid", "topics": [ "plot_weight_matrix" ] }, { "page": "plot.cvn", "title": "Plot Function for CVN Object Class", "topics": [ "plot.cvn" ] }, { "page": "print.cvn", "title": "Print CVN", "topics": [ "print.cvn" ] }, { "page": "relative_difference_precision_matrices", "title": "The Relative Difference between two Precision Matrices", "topics": [ "relative_difference_precision_matrices" ] }, { "page": "set_attributes_to_edges_visnetwork", "title": "Add Attributes to Subset of Edges for 'visNetwork'", "topics": [ "set_attributes_to_edges_visnetwork" ] }, { "page": "strip_cvn", "title": "Strip CVN", "topics": [ "strip_cvn" ] }, { "page": "updateZRcpp", "title": "The Z-update Step", "topics": [ "updateZRcpp" ] }, { "page": "visnetwork", "title": "A 'visNetwork' plot", "topics": [ "visnetwork" ] }, { "page": "visnetwork_cvn", "title": "All 'visNetwork' plots for a CVN object", "topics": [ "visnetwork_cvn" ] } ], "_readme": "https://github.com/bips-hb/CVN/raw/HEAD/README.md", "_rundeps": [ "base64enc", "bslib", "cachem", "cli", "codetools", "cpp11", "crayon", "digest", "doParallel", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "foreach", "fs", "generics", "ggplot2", "glasso", "glue", "gtable", "highr", "hms", "htmltools", "htmlwidgets", "igraph", "isoband", "iterators", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lifecycle", "magrittr", "Matrix", "memoise", "mime", "pillar", "pkgconfig", "plyr", "prettyunits", "progress", "R6", "rappdirs", "RColorBrewer", "Rcpp", "reshape2", "rlang", "rmarkdown", "S7", "sass", "scales", "stringi", "stringr", "tibble", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "visNetwork", "withr", "xfun", "yaml" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 2.3010299956639813, "_indexed": true, "_nocasepkg": "cvn", "_universes": [ "bips-hb", "rforaita" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1", "date": "2026-06-14T08:05:00.000Z", "distro": "noble", "arch": "aarch64", "commit": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "fileid": "https://r2.ropensci.org/62fcd92d4cdc4e5534bf8e9c5f5f157410ef733c5efb1b39fe416b23b2e40afa", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182" }, { "r": "4.7.0", "os": "linux", "version": "1.1", "date": "2026-06-14T08:04:45.000Z", "distro": "noble", "arch": "x86_64", "commit": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "fileid": "https://r2.ropensci.org/4ff85a96d4059453ddaf6174f5acf22ff3fb044ef2fffa36da4a400c64428309", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182" }, { "r": "4.6.0", "os": "linux", "version": "1.1", "date": "2026-06-14T08:04:47.000Z", "distro": "noble", "arch": "aarch64", "commit": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "fileid": "https://r2.ropensci.org/75a5f3c9d61d11ffd93bb21a97ab53ea8096f68686b8b993674a1f65a81493ee", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182" }, { "r": "4.6.0", "os": "linux", "version": "1.1", "date": "2026-06-14T08:04:57.000Z", "distro": "noble", "arch": "x86_64", "commit": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "fileid": "https://r2.ropensci.org/0d794079e354dfdf61324c03511989e1708aca8303e08d5b5ff15f4a1c75ff58", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182" }, { "r": "4.5.3", "os": "mac", "version": "1.1", "date": "2026-06-14T08:03:52.000Z", "arch": "aarch64", "commit": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "fileid": "https://r2.ropensci.org/9d3b72498fc2f3f2e8320eed112ac8025ae6bd7f02809753407a2c5c5592ca25", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182" }, { "r": "4.5.3", "os": "mac", "version": "1.1", "date": "2026-06-14T08:05:07.000Z", "arch": "x86_64", "commit": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "fileid": "https://r2.ropensci.org/a1b8a94a88cca226ca05b9434dd74d5525d3da0df3b904094c38beb120088d53", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182" }, { "r": "4.6.0", "os": "mac", "version": "1.1", "date": "2026-06-14T08:04:36.000Z", "arch": "aarch64", "commit": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "fileid": "https://r2.ropensci.org/e79468a14463307b7f8f4c97151bdfe448f8d976cfeddaa2ed5d3a8b7076bcc8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182" }, { "r": "4.6.0", "os": "mac", "version": "1.1", "date": "2026-06-14T08:05:21.000Z", "arch": "x86_64", "commit": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "fileid": "https://r2.ropensci.org/ad9506b4092695b19a33b05734fa93823d8eac93a120edc2a5399d80fc77af42", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182" }, { "r": "4.6.0", "os": "wasm", "version": "1.1", "date": "2026-06-14T08:04:50.000Z", "arch": "emscripten", "commit": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "fileid": "https://r2.ropensci.org/3217a6f31bc60f2a24c813a080a9edbb3bade0b7c01de01df7e9c79686177b3a", "status": "success", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182" }, { "r": "4.7.0", "os": "win", "version": "1.1", "date": "2026-06-14T08:03:52.000Z", "arch": "x86_64", "commit": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "fileid": "https://r2.ropensci.org/1397d271943c9eaf946761d2e2d6d71d9d7ce764e074a0dced782faa9960bdda", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182" }, { "r": "4.5.3", "os": "win", "version": "1.1", "date": "2026-06-14T08:03:48.000Z", "arch": "x86_64", "commit": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "fileid": "https://r2.ropensci.org/4928a2a309e0f6c0227b2578e74650d7744fd69cdc7449913100275eae338443", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182" }, { "r": "4.6.0", "os": "win", "version": "1.1", "date": "2026-06-14T08:03:56.000Z", "arch": "x86_64", "commit": "7d878b78d4698c7cf36ad1e24dc20e954f229d0c", "fileid": "https://r2.ropensci.org/a93a3129cbc82021b0042dd67ccee3a55ddb7ab7101065aa4ecbe88c5d29d3f4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/27492596182" } ] }