{ "_id": "6a1c08b51d7bb097a0a2c393", "Package": "tpc", "Type": "Package", "Title": "Tiered PC Algorithm", "Version": "1.0", "Authors@R": "c(\nperson(given = \"Janine\", family = \"Witte\",\nemail = \"witte@leibniz-bips.de\", role = c(\"aut\")),\nperson(given = \"Ronja\", family = \"Foraita\",\nemail = \"foraita@leibniz-bips.de\", role = c(\"cre\",\"ctb\"),\ncomment = c(ORCID = \"0000-0003-2216-6653\")),\nperson(\"DFG\", role = \"fnd\"))", "Maintainer": "Ronja Foraita ", "Description": "Constraint-based causal discovery using the PC algorithm\nwhile accounting for a partial node ordering, for example a\npartial temporal ordering when the data were collected in\ndifferent waves of a cohort study. Andrews RM, Foraita R,\nDidelez V, Witte J (2021) provide a guide\nhow to use tpc to analyse cohort data.", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.2.3", "License": "GPL (>= 3)", "URL": "https://github.com/bips-hb/tpc", "BugReports": "https://github.com/bips-hb/tpc/issues", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libglpk-dev libxml2-dev", "Repository": "https://bips-hb.r-universe.dev", "Date/Publication": "2023-02-18 14:45:01 UTC", "RemoteUrl": "https://github.com/bips-hb/tpc", "RemoteRef": "HEAD", "RemoteSha": "137e18be731c51f7a37f7bfeac7fc86f5fafd631", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-31 10:04:49 UTC", "User": "root" }, "Author": "Janine Witte [aut],\nRonja Foraita [cre, ctb] (ORCID:\n),\nDFG [fnd]", "MD5sum": "d560c81f0a34325a6613d69f948763e2", "_user": "bips-hb", "_type": "src", "_file": "tpc_1.0.tar.gz", "_fileid": "fe51952d519ce2698d67b3345201ee16a1a9445c6e031a09ff3b97880b92f551", "_filesize": 806086, "_sha256": "fe51952d519ce2698d67b3345201ee16a1a9445c6e031a09ff3b97880b92f551", "_created": "2026-05-31T10:04:49.000Z", "_published": "2026-05-31T10:08:53.953Z", "_distro": "noble", "_jobs": [ { "job": 78717377764, "time": 170, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7315842269" }, { "job": 78717377772, "time": 205, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7315845640" }, { "job": 78717377771, "time": 122, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7315837582" }, { "job": 78717377763, "time": 111, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7315836502" }, { "job": 78717162760, "time": 226, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7315824271" }, { "job": 78717377768, "time": 176, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7315842990" }, { "job": 78717377789, "time": 157, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7315841146" }, { "job": 78717377791, "time": 105, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7315835945" }, { "job": 78717377783, "time": 111, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7315836620" } ], "_buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26709573117", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bips-hb/tpc", "_commit": { "id": "137e18be731c51f7a37f7bfeac7fc86f5fafd631", "author": "Ronja Foraita ", "committer": "Ronja Foraita ", "message": "changed description and included references\n", "time": 1676731501 }, "_maintainer": { "name": "Ronja Foraita", "email": "foraita@leibniz-bips.de", "login": "rforaita", "description": "", "uuid": 15413913, "orcid": "0000-0003-2216-6653" }, "_registered": true, "_dependencies": [ { "package": "pcalg", "role": "Depends" }, { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "graph", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "Rgraphviz", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "bips-hb", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "causal-discovery", "cohort-analysis", "graphical-models" ], "_stars": 8, "_contributors": [ { "user": "jawitte", "count": 51, "uuid": 12774797 }, { "user": "rforaita", "count": 19, "uuid": 15413913 } ], "_userbio": { "uuid": 34575917, "type": "organization", "name": "BIPS", "description": "Leibniz Institute for Prevention Research and Epidemiology" }, "_downloads": { "count": 205, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/tpc" }, "_devurl": "https://github.com/bips-hb/tpc", "_searchresults": 20, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/tpc.html", "manual.pdf" ], "_homeurl": "https://github.com/bips-hb/tpc", "_realowner": "bips-hb", "_cranurl": true, "_releases": [ { "version": "1.0", "date": "2023-02-20" } ], "_exports": [ "MeekRules", "tpc", "tpc.cons.intern", "tskeleton" ], "_datasets": [ { "name": "dat_cohort", "title": "Simulated Cohort Data", "object": "dat_cohort", "class": [ "data.frame" ], "fields": [ "country", "sex", "fto", "birth_weight", "age_t0", "bmi_t0", "bodyfat_t0", "education_t0", "fiber_t0", "media_devices_t0", "media_time_t0", "mvpa_t0", "sugar_t0", "wellbeing_t0", "age_t1", "bmi_t1", "bodyfat_t1", "education_t1", "fiber_t1", "media_devices_t1", "media_time_t1", "mvpa_t1", "sugar_t1", "wellbeing_t1", "age_t2", "bmi_t2", "bodyfat_t2", "education_t2", "fiber_t2", "media_devices_t2", "media_time_t2", "mvpa_t2", "sugar_t2", "wellbeing_t2" ], "rows": 5000, "table": true, "tojson": true }, { "name": "dat_cohort_dis", "title": "Simulated Cohort Data - discretized", "object": "dat_cohort_dis", "class": [ "data.frame" ], "fields": [ "country", "sex", "fto", "birth_weight", "age_t0", "bmi_t0", "bodyfat_t0", "education_t0", "fiber_t0", "media_devices_t0", "media_time_t0", "mvpa_t0", "sugar_t0", "wellbeing_t0", "age_t1", "bmi_t1", "bodyfat_t1", "education_t1", "fiber_t1", "media_devices_t1", "media_time_t1", "mvpa_t1", "sugar_t1", "wellbeing_t1", "age_t2", "bmi_t2", "bodyfat_t2", "education_t2", "fiber_t2", "media_devices_t2", "media_time_t2", "mvpa_t2", "sugar_t2", "wellbeing_t2" ], "rows": 5000, "table": true, "tojson": true }, { "name": "dat_cohort_mis", "title": "Simulated Cohort Data - with missing values", "object": "dat_cohort_mis", "class": [ "data.frame" ], "fields": [ "country", "sex", "fto", "birth_weight", "age_t0", "bmi_t0", "bodyfat_t0", "education_t0", "fiber_t0", "media_devices_t0", "media_time_t0", "mvpa_t0", "sugar_t0", "wellbeing_t0", "age_t1", "bmi_t1", "bodyfat_t1", "education_t1", "fiber_t1", "media_devices_t1", "media_time_t1", "mvpa_t1", "sugar_t1", "wellbeing_t1", "age_t2", "bmi_t2", "bodyfat_t2", "education_t2", "fiber_t2", "media_devices_t2", "media_time_t2", "mvpa_t2", "sugar_t2", "wellbeing_t2" ], "rows": 5000, "table": true, "tojson": true }, { "name": "dat_sim", "title": "Simulated Data with a Partial Ordering", "object": "dat_sim", "class": [ "data.frame" ], "fields": [ "A1", "B1", "C1", "A2", "B2", "C2", "A3", "B3", "C3" ], "rows": 1000, "table": true, "tojson": true }, { "name": "true_cohort", "title": "Cohort Data Structure", "object": "true_cohort", "class": [ "graphNEL" ], "fields": [], "table": false, "tojson": false }, { "name": "true_sim", "title": "A DAG with a Partial Ordering", "object": "true_sim", "class": [ "graphNEL" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "dat_cohort", "title": "Simulated Cohort Data", "topics": [ "dat_cohort" ] }, { "page": "dat_cohort_dis", "title": "Simulated Cohort Data - discretized", "topics": [ "dat_cohort_dis" ] }, { "page": "dat_cohort_mis", "title": "Simulated Cohort Data - with missing values", "topics": [ "dat_cohort_mis" ] }, { "page": "dat_sim", "title": "Simulated Data with a Partial Ordering", "topics": [ "dat_sim" ] }, { "page": "MeekRules", "title": "Last Step of tPC Algorithm: Apply Meek's rules", "topics": [ "MeekRules" ] }, { "page": "tpc", "title": "PC Algorithm Accounting for a Partial Node Ordering", "topics": [ "tpc" ] }, { "page": "tpc.cons.intern", "title": "Utility for Conservative and Majority Rule in tpc", "topics": [ "tpc.cons.intern" ] }, { "page": "true_cohort", "title": "Cohort Data Structure", "topics": [ "true_cohort" ] }, { "page": "true_sim", "title": "A DAG with a Partial Ordering", "topics": [ "true_sim" ] }, { "page": "tskeleton", "title": "Estimate the Skeleton of a DAG while Accounting for a Partial Ordering", "topics": [ "tskeleton" ] } ], "_readme": "https://github.com/bips-hb/tpc/raw/HEAD/README.md", "_rundeps": [ "abind", "bdsmatrix", "BH", "BiocGenerics", "BiocManager", "cli", "clue", "cluster", "colorspace", "corpcor", "cpp11", "DEoptimR", "fastICA", "generics", "ggm", "glue", "graph", "igraph", "lattice", "lifecycle", "lmtest", "magrittr", "MASS", "Matrix", "pcalg", "pkgconfig", "RBGL", "Rcpp", "RcppArmadillo", "rlang", "robustbase", "sfsmisc", "vcd", "vctrs", "zoo" ], "_score": 3.9030899869919433, "_indexed": true, "_nocasepkg": "tpc", "_universes": [ "bips-hb", "rforaita" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0", "date": "2026-05-31T10:07:31.000Z", "distro": "noble", "commit": "137e18be731c51f7a37f7bfeac7fc86f5fafd631", "fileid": "09f1a6883439aafd4c73b030aef460e8e0e46d2ea48a4ad88b4609616d3b044a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26709573117" }, { "r": "4.6.0", "os": "linux", "version": "1.0", "date": "2026-05-31T10:08:06.000Z", "distro": "noble", "commit": "137e18be731c51f7a37f7bfeac7fc86f5fafd631", "fileid": "d7c4c3af2db995e0cd1178104b72e90ee15c724af0b5bd78a7c984e3c5ddd79f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26709573117" }, { "r": "4.5.3", "os": "mac", "version": "1.0", "date": "2026-05-31T10:06:49.000Z", "commit": "137e18be731c51f7a37f7bfeac7fc86f5fafd631", "fileid": "76428a9d6bfa085c6a6a29019a6be5065df61f24fb10aaeffb46b4795fe22e0a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26709573117" }, { "r": "4.6.0", "os": "mac", "version": "1.0", "date": "2026-05-31T10:06:38.000Z", "commit": "137e18be731c51f7a37f7bfeac7fc86f5fafd631", "fileid": "8e7579651f34f0b548a7ffc5db582918901960a527600ec8ff04745bbf272fe7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26709573117" }, { "r": "4.6.0", "os": "wasm", "version": "1.0", "date": "2026-05-31T10:08:08.000Z", "commit": "137e18be731c51f7a37f7bfeac7fc86f5fafd631", "fileid": "1a79fe436876eee436278355055b55db440c00b5a014f37b47aa5a138944b0b7", "status": "success", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26709573117" }, { "r": "4.7.0", "os": "win", "version": "1.0", "date": "2026-05-31T10:06:56.000Z", "commit": "137e18be731c51f7a37f7bfeac7fc86f5fafd631", "fileid": "089c76e2281882ef037d3c74c3e64ca1c42341f298a430511ea38933cd75dfae", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26709573117" }, { "r": "4.5.3", "os": "win", "version": "1.0", "date": "2026-05-31T10:06:24.000Z", "commit": "137e18be731c51f7a37f7bfeac7fc86f5fafd631", "fileid": "e10393da9fd69d7a735a79834db9b849fd8a1a6770399708186d4917fd9280bc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26709573117" }, { "r": "4.6.0", "os": "win", "version": "1.0", "date": "2026-05-31T10:06:25.000Z", "commit": "137e18be731c51f7a37f7bfeac7fc86f5fafd631", "fileid": "cf998324070031d23c3ad4d282c60aca1ace878a5de662a190254d0bb31fa156", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26709573117" } ] }