{ "_id": "6a1eef73b401979e73412bc3", "Package": "micd", "Type": "Package", "Title": "Multiple Imputation in Causal Graph Discovery", "Version": "1.1.2", "Date": "2025-11-21", "Authors@R": "c(\nperson(given = \"Ronja\", family = \"Foraita\",\nemail = \"foraita@leibniz-bips.de\", role = c(\"aut\", \"cph\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-2216-6653\")),\nperson(given = \"Janine\", family = \"Witte\",\nemail = \"witte@leibniz-bips.de\", role = \"aut\"))", "Maintainer": "Ronja Foraita ", "Description": "Modified functions of the package 'pcalg' and some\nadditional functions to run the PC and the FCI (Fast Causal\nInference) algorithm for constraint-based causal discovery in\nincomplete and multiply imputed datasets. Foraita R, Friemel J,\nGünther K, Behrens T, Bullerdiek J, Nimzyk R, Ahrens W, Didelez\nV (2020) ; Andrews RM, Bang CW, Didelez\nV, Witte J, Foraita R (2021) ; Witte\nJ, Foraita R, Didelez V (2022) .", "License": "GPL (>= 3)", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "URL": "https://github.com/bips-hb/micd", "BugReports": "https://github.com/bips-hb/micd/issues", "Config/testthat/edition": "3", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libxml2-dev\nlibx11-dev zlib1g-dev", "Repository": "https://bips-hb.r-universe.dev", "Date/Publication": "2025-10-21 19:27:37 UTC", "RemoteUrl": "https://github.com/bips-hb/micd", "RemoteRef": "HEAD", "RemoteSha": "e686c62db54bd41d9081cda6b45d482dda048680", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-19 08:39:21 UTC", "User": "root" }, "Author": "Ronja Foraita [aut, cph, cre] (ORCID:\n),\nJanine Witte [aut]", "MD5sum": "7b396f4cf1564d9e97272d12506eb352", "_user": "bips-hb", "_type": "src", "_file": "micd_1.1.2.tar.gz", "_fileid": "e9142fcc86d27fd8b0ffa80e23e44ff59e3e9ed387050cb13a673290c9d6f4e0", "_filesize": 202916, "_sha256": "e9142fcc86d27fd8b0ffa80e23e44ff59e3e9ed387050cb13a673290c9d6f4e0", "_created": "2026-05-19T08:39:21.000Z", "_published": "2026-06-02T14:57:55.599Z", "_distro": "noble", "_jobs": [ { "job": 79100988504, "time": 248, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7078811696" }, { "job": 79100989198, "time": 273, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7078820369" }, { "job": 79100989088, "time": 147, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7078778033" }, { "job": 79100988686, "time": 129, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7078772478" }, { "job": 79100988242, "time": 242, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7078726766" }, { "job": 79100987546, "time": 200, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7361413156" }, { "job": 79100988965, "time": 199, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7078795692" }, { "job": 79100989837, "time": 175, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7078788431" }, { "job": 79100988814, "time": 188, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7078792233" } ], "_buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26085919511", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bips-hb/micd", "_commit": { "id": "e686c62db54bd41d9081cda6b45d482dda048680", "author": "Ronja Foraita <15413913+rforaita@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #9 from bips-hb/version_1.1.2\n\nremoved library(ranger)", "time": 1761074857 }, "_maintainer": { "name": "Ronja Foraita", "email": "foraita@leibniz-bips.de", "login": "rforaita", "description": "", "uuid": 15413913, "orcid": "0000-0003-2216-6653" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.2", "role": "Depends" }, { "package": "pcalg", "role": "Depends" }, { "package": "mice", "role": "Depends" }, { "package": "RBGL", "role": "Imports" }, { "package": "Rfast", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "nnet", "role": "Suggests" }, { "package": "ranger", "role": "Suggests" }, { "package": "Rgraphviz", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "bips-hb", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-43", "n": 5 } ], "_tags": [], "_topics": [ "causal-discovery", "graphical-models", "multiple-imputation" ], "_stars": 6, "_contributors": [ { "user": "jawitte", "count": 53, "uuid": 12774797 }, { "user": "rforaita", "count": 50, "uuid": 15413913 } ], "_userbio": { "uuid": 34575917, "type": "organization", "name": "BIPS", "description": "Leibniz Institute for Prevention Research and Epidemiology" }, "_downloads": { "count": 321, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/micd" }, "_devurl": "https://github.com/bips-hb/micd", "_searchresults": 24, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/micd.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/bips-hb/micd", "_realowner": "bips-hb", "_cranurl": true, "_releases": [ { "version": "1.1.0", "date": "2022-09-05" }, { "version": "1.1.1", "date": "2023-02-17" }, { "version": "1.1.2", "date": "2025-10-23" } ], "_exports": [ "boot.graph", "disCItwd", "disMItest", "fciMI", "flexCItest", "flexCItwd", "flexMItest", "gaussCItestMI", "gaussCItwd", "gaussMItest", "getSuff", "make.formulas.saturated", "makeResiduals", "mixCItest", "mixCItwd", "mixMItest", "pcMI", "skeletonMI", "with_graph" ], "_help": [ { "page": "boot.graph", "title": "Bootstrap Resampling for the PC-MI- and the FCI-MI-algorithm", "topics": [ "boot.graph" ] }, { "page": "disCItwd", "title": "G square Test for (Conditional) Independence between Discrete Variables with Missings", "topics": [ "disCItwd" ] }, { "page": "disMItest", "title": "G square Test for (Conditional) Independence between Discrete Variables after Multiple Imputation", "topics": [ "disMItest" ] }, { "page": "fciMI", "title": "Estimate a PAG by the FCI-MI Algorithm for Multiple Imputed Data Sets of Continuous Data", "topics": [ "fciMI" ] }, { "page": "flexCItest", "title": "Wrapper for gaussCItest, disCItest and mixCItest", "topics": [ "flexCItest" ] }, { "page": "flexCItwd", "title": "Wrapper for gaussCItwd, disCItwd and mixCItwd", "topics": [ "flexCItwd" ] }, { "page": "flexMItest", "title": "Wrapper for gaussMItest, disMItest and mixMItest", "topics": [ "flexMItest" ] }, { "page": "gaussCItwd", "title": "Fisher's z-Test for (Conditional) Independence between Gaussian Variables with Missings", "topics": [ "gaussCItwd" ] }, { "page": "gaussMItest", "title": "Test Conditional Independence of Gaussians via Fisher's Z Using Multiple Imputations", "topics": [ "gaussCItestMI", "gaussMItest" ] }, { "page": "getSuff", "title": "Obtain 'suffStat' for conditional independence testing", "topics": [ "getSuff" ] }, { "page": "make.formulas.saturated", "title": "Creates a 'formulas' Argument", "topics": [ "make.formulas.saturated" ] }, { "page": "makeResiduals", "title": "Generate residuals based on variables in imputed data sets", "topics": [ "makeResiduals" ] }, { "page": "mixCItest", "title": "Likelihood Ratio Test for (Conditional) Independence between Mixed Variables", "topics": [ "mixCItest" ] }, { "page": "mixCItwd", "title": "Likelihood Ratio Test for (Conditional) Independence between Mixed Variables with Missings", "topics": [ "mixCItwd" ] }, { "page": "mixMItest", "title": "Likelihood Ratio Test for (Conditional) Independence between Mixed Variables after Multiple Imputation", "topics": [ "mixMItest" ] }, { "page": "pcMI", "title": "Estimate the Equivalence Class of a DAG Using the PC-MI Algorithm for Multiple Imputed Data Sets", "topics": [ "pcMI" ] }, { "page": "skeletonMI", "title": "Estimate (Initial) Skeleton of a DAG using the PC Algorithm for Multiple Imputed Data Sets of Continuous Data", "topics": [ "skeletonMI" ] }, { "page": "with_graph", "title": "Evaluate Causal Graph Discovery Algorithm in Multiple Imputed Data sets", "topics": [ "with_graph" ] } ], "_readme": "https://github.com/bips-hb/micd/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "bdsmatrix", "BH", "BiocGenerics", "BiocManager", "bit", "bit64", "boot", "broom", "cli", "clipr", "clue", "cluster", "codetools", "colorspace", "corpcor", "cpp11", "crayon", "DEoptimR", "dplyr", "fastICA", "forcats", "foreach", "generics", "ggm", "glmnet", "glue", "graph", "haven", "hms", "igraph", "iterators", "jomo", "lattice", "lifecycle", "lme4", "lmtest", "magrittr", "MASS", "Matrix", "mice", "minqa", "mitml", "nlme", "nloptr", "nnet", "numDeriv", "ordinal", "pan", "pcalg", "pillar", "pkgconfig", "prettyunits", "progress", "purrr", "R6", "RBGL", "rbibutils", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppParallel", "Rdpack", "readr", "reformulas", "Rfast", "rlang", "robustbase", "rpart", "sfsmisc", "shape", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "tzdb", "ucminf", "utf8", "vcd", "vctrs", "vroom", "withr", "zigg", "zoo" ], "_score": 3.8573324964312685, "_indexed": true, "_nocasepkg": "micd", "_universes": [ "bips-hb", "rforaita" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.2", "date": "2026-05-19T08:42:25.000Z", "distro": "noble", "commit": "e686c62db54bd41d9081cda6b45d482dda048680", "fileid": "3ac13e81aefcf680c975235d56d90f70b1aadebeacc348677063e952af4a41f0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26085919511" }, { "r": "4.6.0", "os": "linux", "version": "1.1.2", "date": "2026-05-19T08:42:55.000Z", "distro": "noble", "commit": "e686c62db54bd41d9081cda6b45d482dda048680", "fileid": "44c64668ffd7d4f6174573ebfc05e9871fad4f31e1d744c032c8db5bc507de03", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26085919511" }, { "r": "4.5.3", "os": "mac", "version": "1.1.2", "date": "2026-05-19T08:41:16.000Z", "commit": "e686c62db54bd41d9081cda6b45d482dda048680", "fileid": "86bcb3dfb8dd74624e3ad958cd534de51d25c4f080cc82192f164fa6779ca568", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26085919511" }, { "r": "4.6.0", "os": "mac", "version": "1.1.2", "date": "2026-05-19T08:40:58.000Z", "commit": "e686c62db54bd41d9081cda6b45d482dda048680", "fileid": "cace4b550e057df2cbaa3a204a0e69170401e103fe8b3036d8dc61a2040e1ac8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26085919511" }, { "r": "4.7.0", "os": "win", "version": "1.1.2", "date": "2026-05-19T08:41:14.000Z", "commit": "e686c62db54bd41d9081cda6b45d482dda048680", "fileid": "3f1c0561766c47fe675a728a015ac0eef18d5d438993ae64e3c1db20d9ae1cb0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26085919511" }, { "r": "4.5.3", "os": "win", "version": "1.1.2", "date": "2026-05-19T08:41:05.000Z", "commit": "e686c62db54bd41d9081cda6b45d482dda048680", "fileid": "fc2c1936bc11dec25edf573b858979e4ffed8b756e6cca8c5ab7174044ecff48", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26085919511" }, { "r": "4.6.0", "os": "win", "version": "1.1.2", "date": "2026-05-19T08:41:10.000Z", "commit": "e686c62db54bd41d9081cda6b45d482dda048680", "fileid": "9197d7c54d7b843a4f6568d83c11f4b4ceee70acf8298cb19998a63ec2e91048", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26085919511" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.2", "date": "2026-06-02T14:57:36.000Z", "commit": "e686c62db54bd41d9081cda6b45d482dda048680", "fileid": "88d84475b99c8ea699f6fc118b940e62b0c9f037638518fef72c22f35e057ccf", "status": "success", "buildurl": "https://github.com/r-universe/bips-hb/actions/runs/26085919511" } ] }